OmicsEE is a browser-based application designed to facilitate the interactive exploration of omics expression data across multiple atlases. It aims to simplify the complex task of visualizing and comparing gene or protein expression levels across diverse biological datasets.
The users have high flexibilities to:
- define datasets to use or to combine: bulk RNA-seq, single-cell RNA-seq, spatial transcriptomics, proteomics, etc
- for each dataset, define the embedding, grouping, labelling, color scheme, etc
- for cross annotation or cross species, define homologs, id conversions, alternative naming, etc
The setup and building of customized exploration is simple. Please have a look here: https://github.com/zglu/OmicsEE and any suggestions are very appreciated.